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Add --reference flag for filter command #118

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standage opened this issue Jan 31, 2022 · 0 comments
Open

Add --reference flag for filter command #118

standage opened this issue Jan 31, 2022 · 0 comments

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@standage
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We should consider adding a --reference flag to mhpl8r filter for samples that are known to come from a single individual. This should cause the command to emit a warning message when the filters result in >2 alleles at a marker.
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